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exprmat
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exprmat
  • exprmat Main Module
  • Metadata
  • Introspective System
    • Help System
  • Single-cell RNA-seq
    • Dataset Creation and Integration
    • Clustering and Annotation
    • Metacell
    • Statistics
    • Profiling Clusters
    • Gene network module
    • Composition Analysis
    • Ligand-receptor interaction analysis
    • Transcription Factor Activity Inference
    • Trajectory Inference
    • Spliced Dynamics Inference
    • Projection and Label Transfer
    • Immune Repertoire Tracing
    • CITE-seq and Antibody Tags
  • ATAC-seq
    • Genome Assembly Visualization
    • Bulk ATAC-seq Analysis
    • Single-cell ATAC-seq Analysis
    • Differential Accessibility Analysis
  • Spatially resolved profiling
    • Multiplex IF and CODEX
    • Spot-based Spatial Profiling (ISS, ISH)
    • Bin-based Spatial Profiling
    • Cell Segmentation
    • Quantification of mIF Images
    • Quantification of Spots
    • Clustering and Annotation
    • Spatial Nearest Neighbor Graph
    • Spatial Domain Identification
    • Deconvolution
    • Axis and Proximity
    • Spatial Interaction Analysis
  • Appendix A. Reference Palettes
exprmat
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Index

Index

B

  • built-in function
    • getwd()
    • memory()
    • setwd()
    • version()
    • version_db()

D

  • define_column() (exprmat.metadata method)

E

  • experiment (built-in class)

G

  • getwd()
    • built-in function

L

  • load_metadata() (in module exprmat)

M

  • memory()
    • built-in function
  • metadata (built-in class)
    • (class in exprmat)

S

  • save() (exprmat.metadata method)
  • set_fraction() (exprmat.metadata method)
  • set_if_contains() (exprmat.metadata method)
  • set_if_ends() (exprmat.metadata method)
  • set_if_starts() (exprmat.metadata method)
  • set_paste() (exprmat.metadata method)
  • setwd()
    • built-in function

V

  • version()
    • built-in function
  • version_db()
    • built-in function
BDEGLMSV

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